Source code for singlet.io.googleapi

# vim: fdm=indent
# author:     Fabio Zanini
# date:       02/08/17
# content:    Support module for filenames related to the Google Sheet APIs.
# Modules
import os
import yaml

from singlet.config import config


# Process config
for sheetname, sheet in config['io']['samplesheets'].items():
    if ('google_id' not in sheet) and ('url' in sheet):
        url = sheet['url']
        config['io']['samplesheets'][sheetname]['google_id'] = url.split('/')[-1]


# Parser

[docs]def parse_samplesheet(sheetname):
    from .samplesheet import SampleSheet

    ss = SampleSheet(sheetname)
    table = ss.get_table(fmt='pandas')

    if ('cells' in sheet) and (sheet['cells'] != 'rows'):
        table = table.T

    return table