singlet
Navigation
Examples
Configuration
API
Related Topics
Documentation overview
Quick search
Index
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
K
|
L
|
M
|
N
|
O
|
P
|
Q
|
R
|
S
|
T
|
U
|
Z
A
add_sheet() (singlet.io.googleapi.samplesheet.SampleSheet method)
affinity_propagation() (singlet.dataset.cluster.Cluster method)
application_name (singlet.io.googleapi.samplesheet.SampleSheet attribute)
average() (singlet.dataset.Dataset method)
,
[1]
B
bin() (singlet.counts_table.counts_table.CountsTable method)
bootstrap() (singlet.dataset.Dataset method)
,
[1]
C
center() (singlet.counts_table.counts_table.CountsTable method)
Cluster (class in singlet.dataset.cluster)
clustermap() (singlet.dataset.plot.Plot method)
,
[1]
compare() (singlet.dataset.Dataset method)
,
[1]
convert_A24_to_row_col() (singlet.io.googleapi.samplesheet.SampleSheet static method)
convert_range_json_to_A1() (singlet.io.googleapi.samplesheet.SampleSheet method)
convert_row_col_to_A1() (singlet.io.googleapi.samplesheet.SampleSheet class method)
convert_row_col_to_A24() (singlet.io.googleapi.samplesheet.SampleSheet static method)
copy() (singlet.dataset.Dataset method)
,
[1]
correlate_features_features() (singlet.dataset.correlations.Correlation method)
,
[1]
correlate_features_phenotypes() (singlet.dataset.correlations.Correlation method)
,
[1]
correlate_phenotypes_phenotypes() (singlet.dataset.correlations.Correlation method)
,
[1]
correlate_samples() (singlet.dataset.correlations.Correlation method)
,
[1]
Correlation (class in singlet.dataset.correlations)
,
[1]
counts (singlet.dataset.Dataset attribute)
,
[1]
CountsTable (class in singlet.counts_table.counts_table)
D
Dataset (class in singlet.dataset)
,
[1]
dataset (singlet.counts_table.counts_table.CountsTable attribute)
dbscan() (singlet.dataset.cluster.Cluster method)
delete_sheet() (singlet.io.googleapi.samplesheet.SampleSheet method)
DimensionalityReduction (class in singlet.dataset.dimensionality)
,
[1]
E
exclude_features() (singlet.counts_table.counts_table.CountsTable method)
expressed() (singlet.dataset.feature_selection.FeatureSelection method)
F
featuremetadatanames (singlet.dataset.Dataset attribute)
,
[1]
featurenames (singlet.dataset.Dataset attribute)
,
[1]
FeatureSelection (class in singlet.dataset.feature_selection)
FeatureSheet (class in singlet.featuresheet)
featuresheet (singlet.dataset.Dataset attribute)
,
[1]
Fit (class in singlet.dataset.fit)
fit_single() (singlet.dataset.fit.Fit method)
from_datasetname() (singlet.counts_table.counts_table.CountsTable class method)
(singlet.featuresheet.FeatureSheet class method)
(singlet.samplesheet.SampleSheet class method)
from_sheetname() (singlet.featuresheet.FeatureSheet class method)
(singlet.samplesheet.SampleSheet class method)
from_tablename() (singlet.counts_table.counts_table.CountsTable class method)
G
gate_features_from_statistics() (singlet.dataset.feature_selection.FeatureSelection method)
get_backgrounds() (singlet.io.googleapi.samplesheet.SampleSheet method)
get_cell_property() (singlet.io.googleapi.samplesheet.SampleSheet method)
get_credentials() (singlet.io.googleapi.samplesheet.SampleSheet method)
get_data() (singlet.io.googleapi.samplesheet.SampleSheet method)
get_header_columns_indices() (singlet.io.googleapi.samplesheet.SampleSheet method)
get_last_column() (singlet.io.googleapi.samplesheet.SampleSheet method)
get_named_ranges() (singlet.io.googleapi.samplesheet.SampleSheet method)
get_other_features() (singlet.counts_table.counts_table.CountsTable method)
get_sheet_id() (singlet.io.googleapi.samplesheet.SampleSheet method)
get_sheet_shape() (singlet.io.googleapi.samplesheet.SampleSheet method)
get_sheetnames() (singlet.io.googleapi.samplesheet.SampleSheet method)
get_spikeins() (singlet.counts_table.counts_table.CountsTable method)
get_statistics() (singlet.counts_table.counts_table.CountsTable method)
get_table() (singlet.io.googleapi.samplesheet.SampleSheet method)
get_text_format() (singlet.io.googleapi.samplesheet.SampleSheet method)
GoogleIOError
H
hex_to_rgb() (singlet.io.googleapi.samplesheet.SampleSheet static method)
hierarchical() (singlet.dataset.cluster.Cluster method)
K
kmeans() (singlet.dataset.cluster.Cluster method)
L
log() (singlet.counts_table.counts_table.CountsTable method)
M
MAX_COLUMN (singlet.io.googleapi.samplesheet.SampleSheet attribute)
N
n_features (singlet.dataset.Dataset attribute)
,
[1]
n_samples (singlet.dataset.Dataset attribute)
,
[1]
normalize() (singlet.counts_table.counts_table.CountsTable method)
O
overdispersed_strata() (singlet.dataset.feature_selection.FeatureSelection method)
P
parse_counts_table() (in module singlet.io)
(in module singlet.io.csv)
parse_counts_table_sparse() (in module singlet.io)
parse_dataset() (in module singlet.io)
parse_featuresheet() (in module singlet.io)
(in module singlet.io.csv)
parse_samplesheet() (in module singlet.io)
(in module singlet.io.csv)
(in module singlet.io.googleapi)
pca() (singlet.dataset.dimensionality.DimensionalityReduction method)
,
[1]
Plot (class in singlet.dataset.plot)
,
[1]
plot_coverage() (singlet.dataset.plot.Plot method)
,
[1]
plot_distributions() (singlet.dataset.plot.Plot method)
,
[1]
pseudocount (singlet.counts_table.counts_table.CountsTable attribute)
Q
query_features_by_counts() (singlet.dataset.Dataset method)
,
[1]
query_features_by_metadata() (singlet.dataset.Dataset method)
,
[1]
query_features_by_name() (singlet.dataset.Dataset method)
,
[1]
query_samples_by_counts() (singlet.dataset.Dataset method)
,
[1]
query_samples_by_metadata() (singlet.dataset.Dataset method)
,
[1]
query_samples_by_name() (singlet.dataset.Dataset method)
,
[1]
R
reindex() (singlet.dataset.Dataset method)
,
[1]
rename() (singlet.dataset.Dataset method)
,
[1]
rgb_to_hex() (singlet.io.googleapi.samplesheet.SampleSheet static method)
S
sam() (singlet.dataset.feature_selection.FeatureSelection method)
samplemetadatanames (singlet.dataset.Dataset attribute)
,
[1]
samplenames (singlet.dataset.Dataset attribute)
,
[1]
SampleSheet (class in singlet.io.googleapi.samplesheet)
(class in singlet.samplesheet)
samplesheet (singlet.dataset.Dataset attribute)
,
[1]
scatter_reduced_samples() (singlet.dataset.plot.Plot method)
,
[1]
scatter_statistics() (singlet.dataset.plot.Plot method)
,
[1]
scopes (singlet.io.googleapi.samplesheet.SampleSheet attribute)
set_backgrounds() (singlet.io.googleapi.samplesheet.SampleSheet method)
set_cell_property() (singlet.io.googleapi.samplesheet.SampleSheet method)
set_dimension_size() (singlet.io.googleapi.samplesheet.SampleSheet method)
set_service() (singlet.io.googleapi.samplesheet.SampleSheet method)
set_sheet() (singlet.io.googleapi.samplesheet.SampleSheet method)
set_text_format() (singlet.io.googleapi.samplesheet.SampleSheet method)
singlet.counts_table.counts_table (module)
singlet.dataset (module)
,
[1]
singlet.dataset.cluster (module)
singlet.dataset.correlations (module)
,
[1]
singlet.dataset.dimensionality (module)
,
[1]
singlet.dataset.feature_selection (module)
singlet.dataset.fit (module)
singlet.dataset.plot (module)
,
[1]
singlet.featuresheet (module)
singlet.io (module)
singlet.io.csv (module)
singlet.io.googleapi (module)
singlet.io.googleapi.samplesheet (module)
singlet.samplesheet (module)
split() (singlet.dataset.Dataset method)
,
[1]
standard_scale() (singlet.counts_table.counts_table.CountsTable method)
T
to_dataset_file() (singlet.dataset.Dataset method)
,
[1]
tsne() (singlet.dataset.dimensionality.DimensionalityReduction method)
,
[1]
U
umap() (singlet.dataset.dimensionality.DimensionalityReduction method)
,
[1]
unique() (singlet.dataset.feature_selection.FeatureSelection method)
unlog() (singlet.counts_table.counts_table.CountsTable method)
Z
z_score() (singlet.counts_table.counts_table.CountsTable method)